Example of workflows/README.md
In DEIB-GECO/RGMQL: GenoMetric Query Language for R/Bioconductor
This folder contains three fully reproducible examples of use cases using expressive power and flexibility of the RGMQL package in biologically relevant applications.
Open the RProject file EXAMPLES.Rproj to set automatically the working directory for the use cases.
For all the use cases, complete workflows are available as R Notebooks: use_case_1.Rmd, use_case_2.Rmd, use_case_3.Rmd.
Corresponding HTML files are available to show the results we previously obtained: use_case_1.html, use_case_2.html, use_case_3.html.
N.B. Before running use case 2, please refer to To_run_use_case_2.txt and choose one of the options to obtain locally the needed second dataset, provided also within GRCh38_miRNA_ACC.zip file.
Before replicating these workflows, we suggest to try also the examples in vignettes/RGMQL-vignette.Rmd to become more familiar with the RGMQL functions.
DEIB-GECO/RGMQL documentation built on Feb. 17, 2024, 10:39 p.m.
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This folder contains three fully reproducible examples of use cases using expressive power and flexibility of the RGMQL package in biologically relevant applications. Open the RProject file EXAMPLES.Rproj to set automatically the working directory for the use cases. For all the use cases, complete workflows are available as R Notebooks: use_case_1.Rmd, use_case_2.Rmd, use_case_3.Rmd. Corresponding HTML files are available to show the results we previously obtained: use_case_1.html, use_case_2.html, use_case_3.html.
N.B. Before running use case 2, please refer to To_run_use_case_2.txt and choose one of the options to obtain locally the needed second dataset, provided also within GRCh38_miRNA_ACC.zip file.
Before replicating these workflows, we suggest to try also the examples in vignettes/RGMQL-vignette.Rmd to become more familiar with the RGMQL functions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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